Whole Wheat Muffin Recipes

Looking for whole wheat muffin recipes? Allrecipes has more than 170 trusted whole wheat muffin recipes complete with ratings, reviews and baking tips.

Staff Picks

Irresistible Double Chocolate Muffins

Rating: Unrated
The absolute best muffins! Don't be fooled by all the healthful ingredients - these sinful muffins are good for curing chocolate cravings!

Morning Glory Muffins I

Rating: Unrated
This muffin has a little bit of everything - carrots, raisins, apple butter, wheat germ, nuts. A perfect start for your day!

Whole Grain Banana Muffins

Rating: Unrated
Fantastic tasting oat bran and whole wheat banana muffin.

Zucchini Yogurt Multigrain Muffins

Rating: Unrated
I tried finding a recipe to get my picky toddler to eat her vegetables. Since I couldn't find a healthy one, I came up with this. Using one cup carrots and one cup zucchini is a nice way to get both the yellow and green veggies into the diet! Any type of nuts, raisins, etc. may be used in the recipe -- whatever is on hand and toddler approved.

Whole Wheat Muffins

Rating: Unrated
The muffins you get from this recipe using all-purpose and whole wheat flour are great while still warm from the oven!

Oat Applesauce Muffins

Rating: Unrated
These hearty muffins will fill you up with fiber and flavor instead of fat.

Molasses Spice Muffins

Rating: Unrated
These muffins are very moist and full of spice. Whole wheat flour adds fiber without taking away any flavor. Try these for breakfast or a wholesome snack.

Savory Zucchini Muffins

Rating: Unrated
A nice change from the traditional sweet zucchini muffin, this recipe utilizes zucchini, onion, garlic, roasted red pepper, and sun-dried tomatoes, resulting in a moist, savory muffin that's perfect at breakfast, lunch, or dinner time! You can sprinkle with a little shredded parmesan before baking, if you like.

Hearty Breakfast Muffins

Rating: Unrated
Healthy, hearty breakfast muffins. These have a lightly sweet flavor and lots of wholesome ingredients to get your day started. Moist, chewy, and not overly dense. Easily customizable! You can use any flavor of yogurt, but I prefer plain Greek yogurt. Customize with your favorite nuts or seeds, zucchini or squash, cooked sweet potato, raisins or cranberries, etc. Enjoy!

Pumpkin Pie Muffins

Rating: Unrated
I made this recipe this fall when I was craving something seasonal. After trying other recipes that just lacked that homey pumpkin-pie taste, I decided to make my own. It makes about 24 large muffins or 6 muffins and a loaf. Even though they last well in the refrigerator, you may want to halve the recipe for individuals or small families. Add some cream cheese frosting and they'd make great cupcakes.

Low-Fat Blueberry Bran Muffins

Rating: Unrated
These muffins are just as delicious and moist as regular muffins! They'll be gone before they have time to cool. Low-fat, healthy and yummy, imagine that.

Whole Wheat Blueberry Muffins

Rating: Unrated
These yummy muffins are made with all whole wheat flour and lots of fresh blueberries. My husband says they're the best muffins he's ever tasted, and even my super picky kids love them!

Inspiration and Ideas

Whole Grain Banana Muffins

"Fantastic-tasting oat bran and whole wheat banana muffins." – caetb

Whole Wheat Blueberry Muffins

"I followed the recipe exactly. They came out soft, moist, and very tasty. Wonderful!" – starandseen

Pumpkin Spice Muffins

Rating: Unrated

If you like a moist, sweet muffin rich with cinnamon and nutmeg, then look no further. This recipe is from The WEBB Cooks, articles and recipes by Robin Webb, courtesy of the American Diabetes Association.